STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydCThiol reductant ABC exporter, CydC subunit; COG: COG4987; Pfam: PF00005; InterPro: IPR014223. (573 aa)    
Predicted Functional Partners:
cydD
Thiol reductant ABC exporter, CydD subunit; COG: COG4988; Pfam: PF00664,PF00005; InterPro: IPR014216.
 
 
0.999
cydB-2
Cytochrome d ubiquinol oxidase, subunit II; COG: COG1294; Pfam: PF02322; InterPro: IPR003317.
 
  
 0.884
cydA2-2
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 
  
 0.811
cydB
Cytochrome d ubiquinol oxidase, subunit II; COG: COG1294; Pfam: PF02322; InterPro: IPR003317.
 
  
 0.782
aat
Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.701
cydA2
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 
  
 0.684
cydA
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 
  
 0.677
trxB
Thioredoxin-disulfide reductase; COG: COG0492; Pfam: PF07992,PF00070; InterPro: IPR005982.
     
 0.491
yecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.485
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
       0.476
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.