STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potGPolyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (377 aa)    
Predicted Functional Partners:
potH
ABC transporter, permease protein; COG: COG1176; Pfam: PF00528; InterPro: IPR000515.
 0.995
potI
ABC transporter, permease protein; COG: COG1177; Pfam: PF00528.
 
 
 0.994
potF
ABC transporter, solute-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.990
potB
Spermidine/putrescine ABC transporter membrane protein; COG: COG1176; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.925
potC
Spermidine/putrescine ABC transporter, permease protein PotC; COG: COG1177; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.901
potD
Spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.885
bioC
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
 
 
  0.697
fbpB
ABC transporter, permease protein; COG: COG1178; Pfam: PF00528.
  
  
 0.597
YbjO
Hypothetical protein.
  
    0.519
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
  
  
 0.509
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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