STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93607.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
rimK
alpha-L-glutamate ligase, RimK family; COG: COG0189; Pfam: PF08443; InterPro: IPR004666; Belongs to the RimK family.
 
  
 0.892
EFE97088.1
Hypothetical protein; Pfam: PF07305; InterPro: IPR009918.
  
     0.772
dapX
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.769
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.759
yecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.746
oapA
Opacity-associated protein A; COG: COG3061; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.720
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.700
EFE97193.1
AsmA family protein; Pfam: PF05170; InterPro: IPR007844.
  
     0.699
EFE96215.1
Hypothetical protein.
  
     0.692
YhcO
Barstar (barnase inhibitor); COG: COG2732; Pfam: PF01337.
  
     0.681
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.