STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93612.1TrkA C-terminal domain protein; COG: COG2985; Pfam: PF06826,PF02080; InterPro: IPR006512. (562 aa)    
Predicted Functional Partners:
psiF
PsiF repeat protein; Pfam: PF07769; InterPro: IPR011690.
  
     0.496
EFE95752.1
Hypothetical protein.
  
     0.490
ompA4
Tat pathway signal sequence domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
    0.469
YciU
Hypothetical protein; COG: COG3099; Pfam: PF04269; InterPro: IPR007376; Belongs to the UPF0263 family.
  
     0.410
uspC
Universal stress family protein; COG: COG0589; Pfam: PF00582; InterPro: IPR014729.
  
     0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.