STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93631.1Hypothetical protein. (201 aa)    
Predicted Functional Partners:
pgpB3
PAP2 family protein; COG: COG0671; Pfam: PF01569; InterPro: IPR000326.
  
  
 0.818
EptA
Arylsulfatase; COG: COG2194; Pfam: PF08019,PF00884; InterPro: IPR000917.
 
   
 0.626
EFE98262.1
DNA-binding helix-turn-helix protein; COG: COG2932; Pfam: PF01381,PF00717; InterPro: IPR001387.
  
     0.558
hslJ
META domain protein; COG: COG3187; Pfam: PF03724; InterPro: IPR005184.
  
     0.467
EFE93711.1
Hypothetical protein; Pfam: PF06779; InterPro: IPR010645.
  
     0.456
yhjW
Arylsulfatase; COG: COG2194; Pfam: PF08019,PF00884; InterPro: IPR000917.
 
   
 0.434
eco
Ecotin; General inhibitor of pancreatic serine proteases: inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases.
 
     0.432
EFE96860.1
Tat pathway signal sequence domain protein; Pfam: PF04932; InterPro: IPR007016.
 
   
 0.422
EFE95488.1
Peptidase S24-like protein; COG: COG2932; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S24 family.
  
     0.421
EFE95758.1
Acetyltransferase, GNAT family; Pfam: PF00583; InterPro: IPR000182.
  
     0.413
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.