STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stp-3Serine transporter; COG: COG0814; InterPro: IPR004694. (432 aa)    
Predicted Functional Partners:
sdaA2
L-serine ammonia-lyase; COG: COG1760; Pfam: PF03315,PF03313; InterPro: IPR004644; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.740
EFE96307.1
Hypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488.
  
     0.463
tnaB
Aromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091.
  
   
 0.454
sdaA
L-serine ammonia-lyase; COG: COG1760; Pfam: PF03315,PF03313; InterPro: IPR004644; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
  
 0.450
YqjC_1
Hypothetical protein; Pfam: PF06476; InterPro: IPR009468.
  
     0.443
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.438
EFE93578.1
Hypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488.
  
     0.425
EFE96174.1
Hypothetical protein; COG: COG3171; Pfam: PF04320; InterPro: IPR007416.
  
     0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.