STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93671.1Hypothetical protein; Pfam: PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (443 aa)    
Predicted Functional Partners:
EFE94158.1
Hypothetical protein.
  
     0.683
EFE94009.1
Hypothetical protein.
  
     0.621
EFE93819.1
Antibiotic biosynthesis monooxygenase; Pfam: PF03992.
  
     0.599
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
  
     0.583
pfkB
1-phosphofructokinase; COG: COG1105; Pfam: PF00294; InterPro: IPR011611; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.568
EFE96160.1
Antibiotic biosynthesis monooxygenase; Pfam: PF03992.
  
    0.560
wcaJ
Undecaprenyl-phosphate glucose phosphotransferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
       0.549
EFE96644.1
Hypothetical protein.
  
     0.544
EFE93629.1
Hypothetical protein.
  
     0.527
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
  
  
 0.512
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.