STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
manBPhosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; COG: COG1109; Pfam: PF02878,PF02879,PF02880,PF00408; InterPro: IPR016055. (477 aa)    
Predicted Functional Partners:
cpsB
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG: COG0836; Pfam: PF00483,PF01050; InterPro: IPR006375; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 0.996
rfbM
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG: COG0836; Pfam: PF00483,PF01050; InterPro: IPR006375; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 0.984
manA
Mannose-6-phosphate isomerase, class I; COG: COG1482; Pfam: PF01238; InterPro: IPR001250; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.924
manX
PTS system, mannose/fructose/sorbose family, IIB component; COG: COG3444; Pfam: PF03610,PF03830; InterPro: IPR004720.
    
 0.919
manZ
PTS system, mannose/fructose/sorbose family, IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
    
  0.902
manY
Mannose permease IIC component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
     
  0.900
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.661
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.607
wcaJ
Undecaprenyl-phosphate glucose phosphotransferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.598
EFE93676.1
Glycosyltransferase, group 1 family protein; COG: COG0438; Pfam: PF00534; InterPro: IPR001296.
 
  
 0.575
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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