STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93679.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
siaB
Cytidylyltransferase; COG: COG1083; Pfam: PF02348; InterPro: IPR003329.
     
 0.736
SpsE
SAF domain protein; COG: COG2089; Pfam: PF00571,PF03102,PF08666,PF01261; InterPro: IPR013785.
     
 0.723
EFE93678.1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
       0.693
EFE93681.1
Polysaccharide biosynthesis protein; COG: COG2244; Pfam: PF01943.
  
    0.668
lacA2
Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132.
       0.667
EFE93677.1
Hypothetical protein.
       0.627
EFE93675.1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
       0.598
EFE93676.1
Glycosyltransferase, group 1 family protein; COG: COG0438; Pfam: PF00534; InterPro: IPR001296.
       0.598
wzc2
Chain length determinant protein; COG: COG3206; Pfam: PF02706; InterPro: IPR003856.
       0.474
wzb
Low molecular weight phosphotyrosine protein phosphatase; COG: COG0394; Pfam: PF01451; InterPro: IPR000106; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.474
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.