STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzaPolysaccharide biosynthesis/export protein; COG: COG1596; Pfam: PF02563; InterPro: IPR003715. (378 aa)    
Predicted Functional Partners:
wzc2
Chain length determinant protein; COG: COG3206; Pfam: PF02706; InterPro: IPR003856.
 
 
 0.981
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.980
wzc
Chain length determinant protein; COG: COG3206; Pfam: PF02706; InterPro: IPR003856.
 
 
 0.973
wzb
Low molecular weight phosphotyrosine protein phosphatase; COG: COG0394; Pfam: PF01451; InterPro: IPR000106; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 0.961
wcaJ
Undecaprenyl-phosphate glucose phosphotransferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
 
  
 0.802
cpsB
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG: COG0836; Pfam: PF00483,PF01050; InterPro: IPR006375; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.776
ompA4
Tat pathway signal sequence domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 0.713
rfbM
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG: COG0836; Pfam: PF00483,PF01050; InterPro: IPR006375; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.713
tsx
Nucleoside-specific channel-forming protein Tsx; COG: COG3248; Pfam: PF03502; InterPro: IPR003055.
  
  
  0.697
EFE93661.1
Glycosyltransferase, group 1 family protein; Pfam: PF00534.
  
  
 0.696
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.