STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93694.1PAP2 family protein; Pfam: PF01569; InterPro: IPR000326. (216 aa)    
Predicted Functional Partners:
EFE95350.1
ABC transporter, solute-binding protein; InterPro: IPR011587.
  
     0.644
YgcS
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
     0.592
phyM
Histidine acid phosphatase; Pfam: PF00328; InterPro: IPR000560.
  
     0.590
EFE94419.1
Tat pathway signal sequence domain protein.
  
     0.545
EFE95367.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
     0.523
EFE94158.1
Hypothetical protein.
 
     0.501
EFE94700.1
Hypothetical protein.
  
     0.500
EFE94940.1
Hypothetical protein.
  
     0.494
EFE95380.1
Rhodanese-like protein; Pfam: PF00581; InterPro: IPR001763.
  
 
   0.492
EFE95374.1
Tat pathway signal sequence domain protein.
  
     0.477
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.