STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrgALrgA family protein; COG: COG1380; Pfam: PF03788; InterPro: IPR005538. (146 aa)    
Predicted Functional Partners:
lrgB2
Putative TIGR00659 family protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
 
  
 0.978
EFE93700.1
Hypothetical protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
 
  
 0.920
lrgB
Putative TIGR00659 family protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
 
  
 0.905
bioA
Adenosylmethionine-8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.
      0.632
EFE93698.1
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
       0.584
CidA
LrgA family protein; Pfam: PF03788; InterPro: IPR005538.
  
   
 0.542
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
       0.478
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.