STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimD3Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015. (849 aa)    
Predicted Functional Partners:
mrkD
Fimbrial protein; COG: COG3539; Pfam: PF00419; InterPro: IPR014779.
 
 
 0.967
ecpD2
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
 
 
 0.944
fimA3
Fimbrial protein; Pfam: PF00419; InterPro: IPR014779.
 
 
 0.902
stgB
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
 
 
 0.877
ecpD
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
 
 
 0.877
fimC
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
 
 
 0.877
fimC2
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR016147.
 
 
 0.877
mrfD
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR016147.
 
 
 0.876
FimA_8
Fimbrial protein; Pfam: PF00419; InterPro: IPR000259.
 
 
 0.858
FimA_2
Fimbrial protein; COG: COG3539; Pfam: PF00419; InterPro: IPR014779.
 
 
 0.844
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.