Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFE93751.1Hypothetical protein. (221 aa)    
Predicted Functional Partners:
EFE93753.1
Putative phage prohead protease, HK97 family.
  
 
 0.897
EFE93752.1
Hypothetical protein.
     
 0.858
matB
Fimbrillin MatB.
  
  
 0.613
matC
Putative protein MatC.
  
   
0.605
EFE95360.1
Hypothetical protein.
  
 
 0.569
papC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.462
psaC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.462
fimD
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.462
fimD2
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.462
bcfC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.462
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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