STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garRPhosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; COG: COG2084; Pfam: PF03446; InterPro: IPR015815. (304 aa)    
Predicted Functional Partners:
hopAN
YgbK domain protein; COG: COG3395; Pfam: PF07005; InterPro: IPR010737.
 
  
 0.940
hyi
AP endonuclease, family 2; COG: COG3622; Pfam: PF01261; InterPro: IPR013022; Belongs to the hyi family.
 
  
 0.912
ygbL
Putative aldolase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
 
  
 0.884
fba
Class II aldolase, tagatose bisphosphate family; COG: COG0191; Pfam: PF01116; InterPro: IPR013785.
 
    0.754
fba2
Ketose-bisphosphate aldolase; COG: COG0191; Pfam: PF01116; InterPro: IPR013785.
 
    0.625
EFE97450.1
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
    0.606
pcaC
Carboxymuconolactone decarboxylase family protein; COG: COG0599; Pfam: PF02627; InterPro: IPR003779.
 
  
 0.581
EFE98295.1
Cupin domain protein; COG: COG1917; Pfam: PF07883.
 
  
 0.546
YgbN_4
Transporter, gluconate:H+ symporter family; COG: COG2610; Pfam: PF02447; InterPro: IPR003474.
     
 0.530
fadB
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.475
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.