STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hopANYgbK domain protein; COG: COG3395; Pfam: PF07005; InterPro: IPR010737. (421 aa)    
Predicted Functional Partners:
ygbL
Putative aldolase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
  
 0.990
garR
Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; COG: COG2084; Pfam: PF03446; InterPro: IPR015815.
 
  
 0.940
hyi
AP endonuclease, family 2; COG: COG3622; Pfam: PF01261; InterPro: IPR013022; Belongs to the hyi family.
 
  
 0.925
EFE97450.1
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
    0.704
ygbI
Transcriptional regulator, DeoR family; COG: COG1349; Pfam: PF08220,PF00455; InterPro: IPR014036.
 
  
 0.587
YgbN_4
Transporter, gluconate:H+ symporter family; COG: COG2610; Pfam: PF02447; InterPro: IPR003474.
 
   
 0.587
Hyi
AP endonuclease, family 2; COG: COG3622; Pfam: PF01261; InterPro: IPR013022; Belongs to the hyi family.
 
  
 0.451
abrB
Putative membrane protein AbrB; COG: COG3180; Pfam: PF05145; InterPro: IPR007820.
  
     0.429
EFE95350.1
ABC transporter, solute-binding protein; InterPro: IPR011587.
 
     0.429
pdxA-2
4-hydroxythreonine-4-phosphate dehydrogenase; COG: COG1995; Pfam: PF04166; InterPro: IPR005255; Belongs to the PdxA family.
 
     0.410
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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