STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgbN_4Transporter, gluconate:H+ symporter family; COG: COG2610; Pfam: PF02447; InterPro: IPR003474. (452 aa)    
Predicted Functional Partners:
EFE93765.1
Acetyltransferase, GNAT family; COG: COG1670; Pfam: PF00583; InterPro: IPR016181.
  
    0.631
hopAN
YgbK domain protein; COG: COG3395; Pfam: PF07005; InterPro: IPR010737.
 
   
 0.587
garR
Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; COG: COG2084; Pfam: PF03446; InterPro: IPR015815.
     
 0.530
hyi
AP endonuclease, family 2; COG: COG3622; Pfam: PF01261; InterPro: IPR013022; Belongs to the hyi family.
       0.514
ygbL
Putative aldolase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
     
 0.508
aroK-3
Shikimate kinase; COG: COG3265; Pfam: PF01202; InterPro: IPR006001.
 
  
 0.487
aroK3
Carbohydrate kinase, thermoresistant glucokinase family; COG: COG3265; InterPro: IPR006001.
 
  
 0.485
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.