STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompXOuter membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758. (172 aa)    
Predicted Functional Partners:
aaeX
Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.
  
     0.774
holE
DNA polymerase III subunit theta; Pfam: PF06440; InterPro: IPR011325.
  
     0.773
EFE96912.1
Hypothetical protein; Overlaps another CDS with the same product name; 3.6.1.-.
  
     0.772
EFE94915.1
Hypothetical protein.
  
     0.772
EFE94171.1
Hypothetical protein.
  
     0.772
YdgH_3
Hypothetical protein; Pfam: PF07338.
  
     0.770
YgdR_2
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
  
     0.769
YciC
Hypothetical protein; Pfam: PF06790; InterPro: IPR009627.
  
     0.769
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.769
LpoB
Hypothetical protein; COG: COG3417.
  
     0.769
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.