STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93785.1Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR001647. (204 aa)    
Predicted Functional Partners:
KefF_2
Flavodoxin-like protein; COG: COG2249; Pfam: PF02525; InterPro: IPR003680.
 
     0.771
AcnR
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287.
  
     0.488
EFE95108.1
Type VI secretion system FHA domain protein.
  
     0.486
EFE95109.1
FHA domain protein; Pfam: PF00498.
  
   
 0.472
EFE94478.1
Hypothetical protein; COG: COG3729.
  
     0.453
EFE97983.1
Hypothetical protein; COG: COG5426; Pfam: PF07090; InterPro: IPR010768.
  
     0.439
EFE93783.1
Hypothetical protein.
       0.414
EFE97975.1
TENA/THI-4 family protein; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family.
  
     0.413
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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