STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCCarboxymuconolactone decarboxylase family protein; COG: COG0599; Pfam: PF02627; InterPro: IPR003779. (110 aa)    
Predicted Functional Partners:
EFE98295.1
Cupin domain protein; COG: COG1917; Pfam: PF07883.
 
     0.968
EFE93790.1
Tautomerase enzyme; Pfam: PF01361; InterPro: IPR014347.
 
   
 0.842
garR
Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; COG: COG2084; Pfam: PF03446; InterPro: IPR015815.
 
  
 0.581
glxR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
 
  
 0.578
EFE93792.1
Glutathione S-transferase, N-terminal domain protein; COG: COG0625; Pfam: PF02798; InterPro: IPR012335.
       0.516
dinG
Putative ATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase.
  
    0.512
EFE95393.1
Pyridoxamine 5'-phosphate oxidase family protein; COG: COG3576; Pfam: PF01243; InterPro: IPR011576.
  
  
 0.416
rubA
Rubredoxin; COG: COG1773; Pfam: PF00301; InterPro: IPR004039; Belongs to the rubredoxin family.
  
  
 0.415
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.