STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93801.1Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701. (484 aa)    
Predicted Functional Partners:
smvA
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
     0.750
EFE93802.1
Hypothetical protein; COG: COG2345.
 
     0.709
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
    0.694
rlgA
Helix-turn-helix domain of resolvase; COG: COG1961; Pfam: PF00239,PF02796; InterPro: IPR006119.
  
     0.613
YibH_3
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566; Pfam: PF00529; InterPro: IPR006143.
 
 
 0.544
emrA
Efflux pump membrane protein; COG: COG1566; Pfam: PF00529; InterPro: IPR005694.
 
 
 0.519
EFE93798.1
Branched-chain amino acid transport protein (AzlD); Pfam: PF05437; InterPro: IPR008407.
  
    0.446
azlC
AzlC protein; Pfam: PF03591; InterPro: IPR011606.
       0.445
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.