STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93809.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
EFE93814.1
stearoyl-CoA 9-desaturase; Pfam: PF00487.
 
     0.901
yehW
ABC transporter, permease protein; COG: COG1174; Pfam: PF00528; InterPro: IPR000515.
       0.785
yehY
ABC transporter, permease protein; COG: COG1174; Pfam: PF00528; InterPro: IPR000515.
       0.785
CysA_2
ABC transporter, ATP-binding protein; COG: COG1125; Pfam: PF00005,PF00571; InterPro: IPR003593.
       0.784
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
  
 0.700
phnC
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
  
  
 0.697
phnH
Phosphonate C-P lyase system protein PhnH; COG: COG3625; Pfam: PF05845; InterPro: IPR008772.
  
  
 0.611
phnI
Bacterial phosphonate metabolism protein PhnI; COG: COG3626; Pfam: PF05861; InterPro: IPR008773.
  
  
 0.609
phnL
Phosphonate C-P lyase system protein PhnL; COG: COG4778; Pfam: PF00005; InterPro: IPR012701.
  
  
 0.607
OpuBC
ABC transporter, substrate-binding protein, QAT family; COG: COG1732; Pfam: PF04069; InterPro: IPR007210.
       0.604
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.