STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yehWABC transporter, permease protein; COG: COG1174; Pfam: PF00528; InterPro: IPR000515. (265 aa)    
Predicted Functional Partners:
OpuBC
ABC transporter, substrate-binding protein, QAT family; COG: COG1732; Pfam: PF04069; InterPro: IPR007210.
 
 0.999
CysA_2
ABC transporter, ATP-binding protein; COG: COG1125; Pfam: PF00005,PF00571; InterPro: IPR003593.
 0.997
yehY
ABC transporter, permease protein; COG: COG1174; Pfam: PF00528; InterPro: IPR000515.
 
  
 
0.983
EFE93809.1
Hypothetical protein.
       0.785
proV
ABC transporter, ATP-binding protein; COG: COG4175; Pfam: PF00005; InterPro: IPR003593.
  
 0.726
proV-2
Glycine betaine/L-proline transport ATP binding subunit; COG: COG4175; Pfam: PF00005,PF00571; InterPro: IPR005892.
  
 0.714
EFE93814.1
stearoyl-CoA 9-desaturase; Pfam: PF00487.
       0.583
proX
ABC transporter, substrate-binding protein, QAT family; COG: COG2113; Pfam: PF04069; InterPro: IPR007210.
 
  
 0.422
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.