STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgcSTransporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. (520 aa)    
Predicted Functional Partners:
EFE93694.1
PAP2 family protein; Pfam: PF01569; InterPro: IPR000326.
  
     0.592
XylB_3
Oxidoreductase, zinc-binding dehydrogenase family protein; COG: COG1062; Pfam: PF00107; InterPro: IPR002085.
       0.584
EFE94940.1
Hypothetical protein.
  
     0.452
EFE96283.1
Hypothetical protein.
  
     0.448
EFE96281.1
Integrating conjugative element protein, PFL_4711 family.
  
     0.446
EFE96166.1
Hypothetical protein; Pfam: PF00589; InterPro: IPR013762.
  
     0.442
aaeB
Fusaric acid resistance protein conserved region; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
  
  
 0.428
EFE95367.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
  
     0.421
gudP
Putative glucarate transporter; Pfam: PF07690; InterPro: IPR004744.
  
     0.419
EFE98238.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.