STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93819.1Antibiotic biosynthesis monooxygenase; Pfam: PF03992. (181 aa)    
Predicted Functional Partners:
NfdA
Amidohydrolase family protein; COG: COG1574; Pfam: PF07969; InterPro: IPR013108.
 
     0.775
YcaC_2
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
       0.630
EFE93671.1
Hypothetical protein; Pfam: PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.599
EFE94009.1
Hypothetical protein.
  
     0.452
yeeY
LysR substrate binding domain protein; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
       0.432
EFE94158.1
Hypothetical protein.
  
     0.430
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.