STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urtBUrea ABC transporter, permease protein UrtB; COG: COG0559; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family. (485 aa)    
Predicted Functional Partners:
urtC
Urea ABC transporter, permease protein UrtC; COG: COG4177; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
urtA
Urea ABC transporter, urea binding protein; COG: COG0683.
 
 
 0.997
urtE
Urea ABC transporter, ATP-binding protein UrtE; COG: COG0410; Pfam: PF00005; InterPro: IPR003439.
 
 
 0.995
urtD
Urea ABC transporter, ATP-binding protein UrtD; COG: COG4674; Pfam: PF00005; InterPro: IPR003439.
 
 0.995
livF2
Putative urea ABC transporter, ATP-binding protein UrtE; COG: COG0410; Pfam: PF00005; InterPro: IPR003439.
 
 
 0.971
braF
ABC transporter, ATP-binding protein; COG: COG0411; Pfam: PF00005; InterPro: IPR003439.
  
 0.889
YdfH_5
Transcriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
     0.852
braE
Branched-chain amino acid ABC transporter, permease protein; COG: COG4177; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
  
0.768
braC
Receptor family ligand-binding protein; COG: COG0683; Pfam: PF01094; InterPro: IPR001828.
 
  
 0.739
braG
ABC transporter, ATP-binding protein; COG: COG0410; Pfam: PF00005; InterPro: IPR003439; Belongs to the ABC transporter superfamily.
 
  
 0.702
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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