STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NepI_4Transporter, major facilitator family protein; COG: COG2814; Pfam: PF07690; InterPro: IPR011701. (369 aa)    
Predicted Functional Partners:
BenM_4
Transcriptional regulator, LysR family; COG: COG0583; Pfam: PF00126; InterPro: IPR011991; Belongs to the LysR transcriptional regulatory family.
       0.603
DmlR_39
Hypothetical protein; COG: COG0583; Pfam: PF03466; InterPro: IPR005119.
       0.556
yeaN2
Transporter, major facilitator family protein; COG: COG2807; Pfam: PF07690; InterPro: IPR011701.
  
    0.481
cynX
Transporter, major facilitator family protein; COG: COG2807; Pfam: PF07690; InterPro: IPR011701.
  
    0.449
yeaN
Transporter, major facilitator family protein; COG: COG2807; Pfam: PF07690; InterPro: IPR011701.
  
    0.436
ydeV
Carbohydrate kinase, FGGY family protein; Catalyzes the phosphorylation of autoinducer-2 (AI-2) to phospho-AI-2, which subsequently inactivates the transcriptional regulator LsrR and leads to the transcription of the lsr operon. Phosphorylates the ring-open form of (S)-4,5-dihydroxypentane-2,3-dione (DPD), which is the precursor to all AI-2 signaling molecules, at the C5 position.
  
    0.431
yajD
HNH endonuclease domain protein; Pfam: PF01844.
       0.421
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.