STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YohCHypothetical protein; Pfam: PF06930; InterPro: IPR009698. (196 aa)    
Predicted Functional Partners:
algQ
Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase.
  
     0.753
EFE96528.1
Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659.
  
     0.554
accB-2
SpoVR family protein; COG: COG2719; Pfam: PF04293; InterPro: IPR007390.
   
  
 0.541
ligA
NAD-dependent DNA ligase OB-fold domain protein; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
  
     0.539
Maa_2
Bacterial transferase hexapeptide repeat protein; Pfam: PF00132.
       0.491
EFE93879.1
Acetyltransferase, GNAT family; Pfam: PF00583; InterPro: IPR016181.
       0.491
YqcC
Hypothetical protein; COG: COG3098; Pfam: PF04287; InterPro: IPR007384.
  
     0.476
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.