STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioCABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525. (390 aa)    
Predicted Functional Partners:
ccmA2
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
  
 0.996
htpX3
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG0845; Pfam: PF00529; InterPro: IPR006143.
 
  
 0.944
bioH2
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
  
 
0.882
lptB
ABC transporter, ATP-binding protein; COG: COG1137; Pfam: PF00005; InterPro: IPR003593.
   
 0.878
braF
ABC transporter, ATP-binding protein; COG: COG0411; Pfam: PF00005; InterPro: IPR003439.
 
      0.859
yadG
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
 
  
 0.834
acrR4
Transcriptional regulator, TetR family; COG: COG1309; Pfam: PF00440,PF09209; InterPro: IPR015292.
 
  
 0.803
braG
ABC transporter, ATP-binding protein; COG: COG0410; Pfam: PF00005; InterPro: IPR003439; Belongs to the ABC transporter superfamily.
 
      0.800
urtE
Urea ABC transporter, ATP-binding protein UrtE; COG: COG0410; Pfam: PF00005; InterPro: IPR003439.
 
      0.784
potA
ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.755
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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