STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FrmRHypothetical protein; COG: COG1937; Pfam: PF02583; InterPro: IPR003735. (91 aa)    
Predicted Functional Partners:
czcD
Cation diffusion facilitator family transporter; COG: COG1230; Pfam: PF01545; InterPro: IPR002524.
 
  
 0.806
EFE93916.1
Hypothetical protein; COG: COG3339; Pfam: PF06803; InterPro: IPR010652.
       0.790
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
  
  
 0.762
adhC
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; COG: COG1062; Pfam: PF08240,PF00107; InterPro: IPR014183; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  
 0.669
XylB_3
Oxidoreductase, zinc-binding dehydrogenase family protein; COG: COG1062; Pfam: PF00107; InterPro: IPR002085.
  
  
 0.669
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
  
  
 0.657
YbhB
Raf-like protein; COG: COG1881; Pfam: PF01161; InterPro: IPR008914.
       0.465
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.417
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.