STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
czcDCation diffusion facilitator family transporter; COG: COG1230; Pfam: PF01545; InterPro: IPR002524. (357 aa)    
Predicted Functional Partners:
FrmR
Hypothetical protein; COG: COG1937; Pfam: PF02583; InterPro: IPR003735.
 
  
 0.806
EFE93916.1
Hypothetical protein; COG: COG3339; Pfam: PF06803; InterPro: IPR010652.
 
     0.698
YbhB
Raf-like protein; COG: COG1881; Pfam: PF01161; InterPro: IPR008914.
       0.618
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
  
  
 0.601
fieF
Ferrous iron efflux protein F; COG: COG0053; Pfam: PF01545; InterPro: IPR002524; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.416
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.