STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YecD_5Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868. (190 aa)    
Predicted Functional Partners:
EFE94574.1
Isochorismatase family protein; Pfam: PF00857; InterPro: IPR000868.
  
     0.617
modF
ABC transporter, ATP-binding protein; COG: COG1119; Pfam: PF00005; InterPro: IPR003439.
       0.508
EFE93930.1
CAAX amino terminal protease family protein; COG: COG1266; Pfam: PF02517; InterPro: IPR003675.
       0.489
pncA
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
  
     0.479
EFE95420.1
NAD dependent epimerase/dehydratase family protein; Pfam: PF01370; InterPro: IPR016040.
  
    0.422
modE
TOBE domain protein; COG: COG2005; Pfam: PF00126,PF03459; InterPro: IPR005116.
       0.416
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.