STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93930.1CAAX amino terminal protease family protein; COG: COG1266; Pfam: PF02517; InterPro: IPR003675. (290 aa)    
Predicted Functional Partners:
EFE93552.1
YcaO-like family; COG: COG1944; Pfam: PF02624; InterPro: IPR003776.
  
  
 0.793
EFE93849.1
Hypothetical protein.
  
     0.696
parA
Plasmid partition protein A; COG: COG1192.
 
     0.568
EFE97000.1
Hypothetical protein; COG: COG5645; Pfam: PF07119; InterPro: IPR010780.
  
     0.503
EFE97198.1
Filamentous hemeagglutinin family domain protein; COG: COG3210; Pfam: PF05860,PF05594; InterPro: IPR012334.
  
     0.499
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
   
 0.493
YecD_5
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
       0.489
EFE98210.1
OPT oligopeptide transporter protein; Pfam: PF03169; InterPro: IPR004813.
  
     0.485
galT
UTP--hexose-1-phosphate uridylyltransferase; COG: COG1085; Pfam: PF01087,PF02744; InterPro: IPR001937; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
 
     0.477
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
     0.477
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.