STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psiFPsiF repeat protein; Pfam: PF07769; InterPro: IPR011690. (113 aa)    
Predicted Functional Partners:
EFE95929.1
Hypothetical protein; COG: COG3422; Pfam: PF07411; InterPro: IPR010879.
   
    0.649
EFE93357.1
Hypothetical protein.
   
    0.545
ygaU
LysM domain protein; COG: COG1652; Pfam: PF04972,PF01476; InterPro: IPR007055.
   
    0.543
EFE93612.1
TrkA C-terminal domain protein; COG: COG2985; Pfam: PF06826,PF02080; InterPro: IPR006512.
  
     0.496
YqjC_1
Hypothetical protein; Pfam: PF06476; InterPro: IPR009468.
  
    0.494
bcfC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
     0.484
YqjC_2
Hypothetical protein; Pfam: PF06476; InterPro: IPR009468.
  
    0.481
EFE97221.1
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
    0.476
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
       0.443
EFE95752.1
Hypothetical protein.
  
     0.424
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.