STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydB-2Cytochrome d ubiquinol oxidase, subunit II; COG: COG1294; Pfam: PF02322; InterPro: IPR003317. (379 aa)    
Predicted Functional Partners:
cydA2-2
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 0.999
cydA2
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 
 0.961
cydA
Bacterial cytochrome ubiquinol oxidase; COG: COG1271; Pfam: PF01654; InterPro: IPR002585.
 
 
 0.952
cydD
Thiol reductant ABC exporter, CydD subunit; COG: COG4988; Pfam: PF00664,PF00005; InterPro: IPR014216.
 
  
 0.927
cydB
Cytochrome d ubiquinol oxidase, subunit II; COG: COG1294; Pfam: PF02322; InterPro: IPR003317.
  
  
 
0.921
cydC
Thiol reductant ABC exporter, CydC subunit; COG: COG4987; Pfam: PF00005; InterPro: IPR014223.
 
  
 0.884
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
    0.778
ybgT
Cyd operon protein YbgT; Pfam: PF08173; InterPro: IPR011724.
  
 
 0.767
sdhC
Succinate dehydrogenase, cytochrome b556 subunit; COG: COG2009; Pfam: PF01127; InterPro: IPR014314; overlaps another CDS with the same product name.
     
 0.570
EFE95231.1
Hypothetical protein.
  
    0.569
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.