STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93526.1Hypothetical protein; COG: COG3272; Pfam: PF04463,PF08349; InterPro: IPR007553. (317 aa)    
Predicted Functional Partners:
phrB
FAD binding domain of DNA photolyase; COG: COG0415; Pfam: PF00875,PF03441; InterPro: IPR005101; Belongs to the DNA photolyase family.
  
  
 0.952
ybgI
Dinuclear metal center protein, YbgI family; COG: COG0327; Pfam: PF01784; InterPro: IPR002678.
       0.593
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
     0.582
cpdP
3',5'-cyclic-nucleotide phosphodiesterase; COG: COG5212; Pfam: PF02112; InterPro: IPR000396.
       0.567
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333.
 
   
 0.566
cfa2
Cyclopropane-fatty-acyl-phospholipid synthase; COG: COG2230; Pfam: PF02353; InterPro: IPR003333.
 
   
 0.564
EFE93527.1
Hypothetical protein.
       0.523
orf
Transcriptional regulator, MerR family; COG: COG0789; Pfam: PF00376; InterPro: IPR000551.
  
  
 0.495
ybgL
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.419
EFE93822.1
Hypothetical protein; COG: COG1683; Pfam: PF04463; InterPro: IPR007553.
  
     0.408
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.