STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93527.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
EFE93700.1
Hypothetical protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
  
    0.819
EFE97991.1
Hypothetical protein; COG: COG1073; Pfam: PF06500; InterPro: IPR010520; 3.1.-.-; Belongs to the UPF0255 family.
  
     0.765
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.758
YceB
Hypothetical protein; Pfam: PF07273; InterPro: IPR010835.
  
     0.752
dinI2
DinI-like family protein; Pfam: PF06183; InterPro: IPR010391.
  
     0.752
YijD
Hypothetical protein; Pfam: PF07226; InterPro: IPR009867.
  
     0.748
EFE94076.1
Hypothetical protein; COG: COG3150; Pfam: PF05728; InterPro: IPR008886; Belongs to the UPF0227 family.
  
     0.744
YciN
Hypothetical protein.
  
     0.741
wzzE
Chain length determinant protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.740
EFE97548.1
Hypothetical protein; Pfam: PF06526; InterPro: IPR009491.
  
     0.676
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.