STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YiaMTRAP transporter, DctQ-like membrane protein; COG: COG3090; Pfam: PF04290; InterPro: IPR007387; overlaps another CDS with the same product name. (170 aa)    
Predicted Functional Partners:
ygiK
TRAP transporter, DctM subunit; COG: COG1593; Pfam: PF06808; InterPro: IPR010656; overlaps another CDS with the same product name.
 
 
 0.976
yiiZ
TRAP transporter solute receptor, DctP family; COG: COG1638; Pfam: PF03480; InterPro: IPR004682.
 
  
 0.964
dctM
TRAP transporter, DctM subunit; COG: COG1593; Pfam: PF06808; InterPro: IPR010656.
 
 
 0.899
dctP
TRAP transporter solute receptor, DctP family; COG: COG1638; Pfam: PF03480; InterPro: IPR004682.
 
  
 0.869
yiiY2
Outer membrane insertion signal domain protein; Pfam: PF06178; InterPro: IPR009331.
       0.563
EFE94936.1
TRAP transporter, 4TM/12TM fusion protein; COG: COG4666; Pfam: PF06808; InterPro: IPR011853.
  
     0.520
EFE96549.1
TRAP transporter, DctQ-like membrane protein; COG: COG3090; Pfam: PF04290; InterPro: IPR007387.
  
     0.465
kdpD2
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG2205; Pfam: PF00512,PF02518; InterPro: IPR003594.
       0.438
kdpE
Response regulator receiver domain protein; COG: COG0745; Pfam: PF00072,PF00486; InterPro: IPR001789.
       0.438
uxaC
Glucuronate isomerase; COG: COG1904; Pfam: PF02614; InterPro: IPR003766.
 
  
 0.417
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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