STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93451.1Outer membrane porin, OprD family; Pfam: PF03573. (468 aa)    
Predicted Functional Partners:
chb-2
Chitobiase; COG: COG3525; Pfam: PF03173,PF02838,PF00728,PF03174; InterPro: IPR013781.
 
   
 0.728
ScrY
Hypothetical protein.
  
   
 0.684
dmsC
DMSO reductase, anchor subunit DmsC; COG: COG3302; Pfam: PF04976; InterPro: IPR007059.
  
     0.683
EFE93450.1
Hypothetical protein.
     
 0.682
hslJ
META domain protein; COG: COG3187; Pfam: PF03724; InterPro: IPR005184.
  
     0.680
YaeP
Hypothetical protein; Pfam: PF06786; InterPro: IPR009624; Belongs to the UPF0253 family.
  
     0.638
EFE93448.1
Hypothetical protein.
       0.620
YcdZ
Hypothetical protein; Pfam: PF06496; InterPro: IPR009476.
  
     0.582
EFE94462.1
Hypothetical protein.
  
     0.578
IcaB
Polysaccharide deacetylase; COG: COG0726; Pfam: PF01522; InterPro: IPR002509.
  
     0.510
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.