STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagC2ROK family protein; COG: COG1940; Pfam: PF01047,PF00480; InterPro: IPR000600. (406 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase; COG: COG1820; Pfam: PF01979; InterPro: IPR003764.
 
  
 0.838
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
  
 
 0.815
nagE
PTS system, N-acetylglucosamine-specific IIBC component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010974.
  
 
 0.815
NagK
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
  
     0.762
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
   
 0.761
treB
PTS system, glucose-like IIB component; Pfam: PF00367,PF02378; InterPro: IPR001996; overlaps another CDS with the same product name.
  
 
 0.700
treB2
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF02378; overlaps another CDS with the same product name.
  
 
 0.700
ascF
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR003352.
  
 
 0.700
ptsG
PTS system, glucose-like IIB component; COG: COG1263; Pfam: PF02378,PF00367; InterPro: IPR003352.
  
 
 0.700
scrA
PTS system sucrose-specific IIBC component; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR010973.
  
 
 0.700
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.