STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyoC3IS66 family element, Orf2 protein; Pfam: PF05717; InterPro: IPR008878. (112 aa)    
Predicted Functional Partners:
EFE93429.1
Hypothetical protein; Pfam: PF03050; InterPro: IPR004291; 1.10.3.-.
 
     0.903
cyoB4
IS66 family element, transposase; COG: COG3436; Pfam: PF03050.
 
     0.778
EFE93404.1
IS66 family element, transposase; COG: COG3436; Pfam: PF03050; InterPro: IPR004291.
 
     0.778
EFE93401.1
IS66 family element, transposase; COG: COG3436; Pfam: PF03050; InterPro: IPR004291.
 
     0.778
cyoB2
IS66 family element, transposase; COG: COG3436; Pfam: PF03050.
 
     0.778
cyoB3
IS66 family element, transposase; COG: COG3436; Pfam: PF03050.
 
     0.778
EFE93427.1
Hypothetical protein.
       0.773
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.