Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFE93429.1Hypothetical protein; Pfam: PF03050; InterPro: IPR004291; 1.10.3.-. (180 aa)    
Predicted Functional Partners:
cyoC3
IS66 family element, Orf2 protein; Pfam: PF05717; InterPro: IPR008878.
 
     0.904
cyoB3
IS66 family element, transposase; COG: COG3436; Pfam: PF03050.
 
     0.882
cyoB2
IS66 family element, transposase; COG: COG3436; Pfam: PF03050.
 
     0.843
cyoB4
IS66 family element, transposase; COG: COG3436; Pfam: PF03050.
 
     0.831
cyoC2
IS66 family element, Orf2 protein; COG: COG3436; Pfam: PF05717; InterPro: IPR008878.
 
     0.780
cyoC-2
IS66 family element, Orf2 protein; COG: COG3436; Pfam: PF05717; InterPro: IPR008878.
 
     0.780
EFE93427.1
Hypothetical protein.
       0.581
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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