Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFE93358.1Hypothetical protein. (1196 aa)    
Predicted Functional Partners:
EFE93360.1
Putative lysozyme; Pfam: PF04965; InterPro: IPR007048.
 
 
 0.996
EFE93357.1
Hypothetical protein.
 
 
 
 0.991
EFE93362.1
Hypothetical protein.
 
 
 0.991
EFE93364.1
Conserved hypothetical phage tail region protein; InterPro: IPR011747.
 
 
 
 0.987
EFE93368.1
Conserved hypothetical phage tail region protein; InterPro: IPR011747.
 
 
 
 0.984
EFE93365.1
Hypothetical protein; Pfam: PF04984; InterPro: IPR007067.
 
 
 0.974
EFE93366.1
Hypothetical protein; Pfam: PF04984; InterPro: IPR007067.
 
 
 0.971
EFE93367.1
Hypothetical protein; Pfam: PF04984; InterPro: IPR007067.
 
 
 0.966
EFE93361.1
Rhs element Vgr protein.
 
 
   0.951
EFE93356.1
Hypothetical protein.
 
     0.901
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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