STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93360.1Putative lysozyme; Pfam: PF04965; InterPro: IPR007048. (155 aa)    
Predicted Functional Partners:
EFE93361.1
Rhs element Vgr protein.
 
 
 0.988
EFE93358.1
Hypothetical protein.
 
 
 0.976
EFE93365.1
Hypothetical protein; Pfam: PF04984; InterPro: IPR007067.
 
 
 0.976
EFE93366.1
Hypothetical protein; Pfam: PF04984; InterPro: IPR007067.
 
 
 0.972
EFE93362.1
Hypothetical protein.
 
   0.971
EFE93367.1
Hypothetical protein; Pfam: PF04984; InterPro: IPR007067.
 
 
 0.967
EFE93364.1
Conserved hypothetical phage tail region protein; InterPro: IPR011747.
 
   0.964
EFE93357.1
Hypothetical protein.
 
 
   0.959
EFE93368.1
Conserved hypothetical phage tail region protein; InterPro: IPR011747.
 
   0.945
EFE97096.1
Phage late control gene D protein (GPD); COG: COG3500; Pfam: PF05954; InterPro: IPR010277.
 
 
 0.868
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.