STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traGTraG-like protein, domain protein; Pfam: PF07916; InterPro: IPR012931. (945 aa)    
Predicted Functional Partners:
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
 
   
 0.956
traH
TraH protein; Pfam: PF06122; InterPro: IPR010927.
 
   
 0.955
trbC
type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113.
 
   
 0.955
traD
Type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128.
 
     0.951
traF
type-F conjugative transfer system pilin assembly protein TraF; InterPro: IPR014110.
 
     0.951
traU
TraU protein; Pfam: PF06834; InterPro: IPR009649.
 
   
 0.940
traW
type-F conjugative transfer system protein TraW; InterPro: IPR014114.
 
     0.939
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
 
   
 0.927
traB
Tat pathway signal sequence domain protein; Pfam: PF06447; InterPro: IPR010501.
 
     0.885
traE
Type IV conjugative transfer system protein TraE; Pfam: PF05309; InterPro: IPR007973.
 
     0.885
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.