STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comDsbA-like protein; COG: COG1651; Pfam: PF01323; InterPro: IPR001853. (306 aa)    
Predicted Functional Partners:
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
 
   
 0.853
traF
type-F conjugative transfer system pilin assembly protein TraF; InterPro: IPR014110.
 
 
 0.785
trbC
type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113.
 
     0.779
traD
Type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128.
 
     0.773
trbI
type-F conjugative transfer system protein TrbI; InterPro: IPR014115.
       0.773
EFE93314.1
Hypothetical protein.
       0.773
traU
TraU protein; Pfam: PF06834; InterPro: IPR009649.
 
     0.768
traW
type-F conjugative transfer system protein TraW; InterPro: IPR014114.
 
     0.758
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
 
   
 0.742
traG
TraG-like protein, domain protein; Pfam: PF07916; InterPro: IPR012931.
 
     0.739
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.