STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nacHypothetical protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (120 aa)    
Predicted Functional Partners:
rps3ae
Hypothetical protein; S4JAPL_C00052G00021; S4JAPL_17452G0021; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.999
EQB70349.1
Hypothetical protein; S4JAPL_C00062G00006; S4JAPL_17498G0006.
  
   0.998
rpl21e
Hypothetical protein; S4JAPL_C00032G00015; S4JAPL_17439G0015; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.996
rpl18
50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
 0.995
rps6e
Hypothetical protein; S4JAPL_C00043G00013; S4JAPL_17306G0013; Belongs to the eukaryotic ribosomal protein eS6 family.
  
    0.995
cca
Hypothetical protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.993
rpl19e
Hypothetical protein; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
   
   0.993
rpl24e
Hypothetical protein; Binds to the 23S rRNA.
   
   0.989
rplW
50S ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
   
 
 0.988
rps17
Hypothetical protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
    0.982
Your Current Organism:
Thermoplasmatales archaeon Aplasma
NCBI taxonomy Id: 667135
Other names: T. archaeon A-plasma, Thermoplasmatales archaeon A-plasma
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.