STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps13Hypothetical protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (155 aa)    
Predicted Functional Partners:
rps17e
30S ribosomal protein S17e; UNLEPL_C00002G00038; UNLEPL_17965G0038; Belongs to the eukaryotic ribosomal protein eS17 family.
   
 0.999
rpl40e
50S ribosomal protein L40E; UNLEPL_C00002G00197; UNLEPL_17965G0197; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.999
EQB67366.1
Hypothetical protein; UNLEPL_C00002G00202; UNLEPL_17965G0202.
   
  0.999
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA.
   
 
 0.999
rpl37e
Hypothetical protein; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
  
 
 0.999
eif5a
Hypothetical protein; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
 
 
 0.999
rpl10e
Hypothetical protein; UNLEPL_C00002G00211; UNLEPL_17965G0211; Belongs to the universal ribosomal protein uL16 family.
 
 
 0.999
eif1a
Hypothetical protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
 0.999
rpl7ae
Hypothetical protein; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.999
rps28e
Hypothetical protein; UNLEPL_C00002G00251; UNLEPL_17965G0251; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 0.999
Your Current Organism:
Thermoplasmatales archaeon Eplasma
NCBI taxonomy Id: 667137
Other names: T. archaeon E-plasma, Thermoplasmatales archaeon E-plasma
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.