STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI54310.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
SEI53634.1
Protein of unknown function.
  
     0.766
SEI53727.1
Hypothetical protein.
  
     0.758
SEJ62691.1
Protein of unknown function.
  
     0.755
SEI53604.1
Protein of unknown function.
  
     0.751
SEI53541.1
Protein of unknown function.
 
     0.747
SEI96757.1
Hypothetical protein.
  
     0.746
SEJ60831.1
Protein of unknown function.
  
     0.739
SEK04429.1
Uncharacterized membrane protein YqjE.
  
     0.739
SEI77155.1
Hypothetical protein.
  
     0.737
SEI56281.1
Lipopolysaccharide export system protein LptC.
  
     0.736
Your Current Organism:
Paraburkholderia diazotrophica
NCBI taxonomy Id: 667676
Other names: BCRC 80259, Burkholderia diazotrophica, Burkholderia diazotrophica Sheu et al. 2013, Burkholderia sp. DPU-3, Burkholderia sp. JPY359, Burkholderia sp. JPY389, Burkholderia sp. JPY461, Burkholderia sp. NKMU-JPY359, Burkholderia sp. NKMU-JPY389, Burkholderia sp. NKMU-JPY461, Burkholderia sp. STM4206, KCTC 23308, LMG 26031, LMG:26031, NKMU JPY461, NKMU-JPY461, P. diazotrophica, Paraburkholderia diazotrophica (Sheu et al. 2013) Sawana et al. 2015, strain JPY461
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