STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ45560.1Transcriptional regulator, GntR family. (241 aa)    
Predicted Functional Partners:
SEJ72018.1
Transcriptional regulator, GntR family.
  
  
 0.779
SEK05484.1
Transcriptional regulator, GntR family.
  
     0.772
SEJ23871.1
Transcriptional regulator, GntR family.
  
    0.754
SEJ06997.1
Transcriptional regulator, GntR family.
  
  
 0.749
SEI68418.1
Transcriptional regulator, GntR family.
  
    0.747
SEJ09686.1
Transcriptional regulator, GntR family.
  
    0.743
SEI61579.1
Transcriptional regulator, GntR family.
  
    0.726
SEI68800.1
DNA-binding transcriptional regulator, FadR family.
  
    0.713
SEJ74345.1
Transcriptional regulator, GntR family.
  
    0.681
SEI77256.1
Acetolactate synthase, small subunit.
   
    0.455
Your Current Organism:
Paraburkholderia diazotrophica
NCBI taxonomy Id: 667676
Other names: BCRC 80259, Burkholderia diazotrophica, Burkholderia diazotrophica Sheu et al. 2013, Burkholderia sp. DPU-3, Burkholderia sp. JPY359, Burkholderia sp. JPY389, Burkholderia sp. JPY461, Burkholderia sp. NKMU-JPY359, Burkholderia sp. NKMU-JPY389, Burkholderia sp. NKMU-JPY461, Burkholderia sp. STM4206, KCTC 23308, LMG 26031, LMG:26031, NKMU JPY461, NKMU-JPY461, P. diazotrophica, Paraburkholderia diazotrophica (Sheu et al. 2013) Sawana et al. 2015, strain JPY461
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.